Clustering
Data Lab for ALSF
2022
This notebook will begin looking at clustering methods on the expression of the genes in a single sample of the dataset of interest, from an unbiased approach.
Set Up
# Load libraries
library(magrittr)
library(scater)
library(readr)
library(bluster)
library(ggpubr)
library(pheatmap)
# Set file paths
data_dir <- file.path("results", "Gawad_processed_data")
# Source custom functions script
source(file.path("utils", "clustering-functions.R"))Read in data
sample_290_normalized <- read_rds(
file.path(data_dir, "SCPCS000216", "SCPCL000290_miQC_downstream_processed_normalized_reduced_sce.rds"))Perform clustering
k-means
# Perform k-means clustering
sample_290_normalized <- kmeans_clustering(
sample_290_normalized,
params_range = c(4:10),
step_size = 1,
check_stability = TRUE
)
# grab column names with clustering results
kmeans_cols <- grep("kmeans", colnames(colData(sample_290_normalized)))
kmeans_cluster_names <- colnames(colData(sample_290_normalized)[, kmeans_cols])
# Plot k-means
kmeans_plot_list <- kmeans_cluster_names %>%
purrr::map(~ plotReducedDim(sample_290_normalized, dimred = "UMAP", colour_by = .x) +
theme_bw()+
theme(text = element_text(size = 22)))
cowplot::plot_grid(plotlist = kmeans_plot_list, ncol = 4)
graph-based, walktrap
# Perform graph-based walktrap clustering
sample_290_normalized <- graph_clustering(
sample_290_normalized,
params_range = c(5:25),
step_size = 5,
weighting_type = "rank",
cluster_function = "walktrap",
check_stability = TRUE
)Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'# grab column names with clustering results
walktrap_cols <- grep("walktrap", colnames(colData(sample_290_normalized)))
walktrap_cluster_names <- colnames(colData(sample_290_normalized)[, walktrap_cols])
# Plot
walktrap_plot_list <- walktrap_cluster_names %>%
purrr::map(~ plotReducedDim(sample_290_normalized, dimred = "UMAP", colour_by = .x) +
theme_bw() +
theme(text = element_text(size = 22)))
cowplot::plot_grid(plotlist = walktrap_plot_list, ncol = 3)
graph-based, louvain
# Perform graph-based louvain clustering
sample_290_normalized <- graph_clustering(
sample_290_normalized,
params_range = c(5:25),
step_size = 5,
weighting_type = "jaccard",
cluster_function = "louvain",
check_stability = TRUE
)Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'# grab column names with clustering results
louvain_cols <- grep("walktrap", colnames(colData(sample_290_normalized)))
louvain_cluster_names <- colnames(colData(sample_290_normalized)[, louvain_cols])
# Plot
louvain_plot_list <- louvain_cluster_names %>%
purrr::map(~ plotReducedDim(sample_290_normalized, dimred = "UMAP", colour_by = .x) +
theme_bw() +
theme(text = element_text(size = 22)))
cowplot::plot_grid(plotlist = louvain_plot_list, ncol = 3)
Check cluster validity stats
k-means
# Check the k-means cluster validity stats for each of the clusters and return
# stats in a data frame
kmeans_stats_df <- create_metadata_stats_df(sample_290_normalized, c(4:10), 1, "kmeans")Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"# Preview the results
head(kmeans_stats_df)
# Summarize the stats and return in a data frame
kmeans_summary_stats_df <- summarize_clustering_stats(kmeans_stats_df)`summarise()` has grouped output by 'cluster_names_column', 'cluster_type'. You can override using the `.groups` argument.# Preview the summary results
head(kmeans_summary_stats_df)purity plots
# Plot individual cluster purity stats
kmeans_purity_plots <- plot_cluster_purity(kmeans_stats_df)
kmeans_purity_plots
silhouette width plots
# Plot individual cluster silhouette width stats
kmeans_silhouette_plots <- plot_cluster_silhouette_width(kmeans_stats_df)
kmeans_silhouette_plots
graph-based, walktrap
# Check the walktrap cluster validity stats for each of the clusters and return
# stats in a data frame
walktrap_stats_df <- create_metadata_stats_df(sample_290_normalized, c(5:25), 5, "walktrap")Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
# Preview the all stats results
head(walktrap_stats_df)
# Summarize the stats and return in a data frame
walktrap_summary_stats_df <- summarize_clustering_stats(walktrap_stats_df)`summarise()` has grouped output by 'cluster_names_column', 'cluster_type'. You can override using the `.groups` argument.# Preview the summary results
head(walktrap_summary_stats_df)purity plots
# Plot individual cluster purity stats
walktrap_purity_plots <- plot_cluster_purity(walktrap_stats_df)
walktrap_purity_plots
silhouette width plots
# Plot individual cluster silhouette width stats
walktrap_silhouette_plots <- plot_cluster_silhouette_width(walktrap_stats_df)
walktrap_silhouette_plots
graph-based, louvain
# Check the louvain cluster validity stats for each of the clusters and return
# stats in a data frame
louvain_stats_df <- create_metadata_stats_df(sample_290_normalized, c(5:25), 5, "louvain")Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"
Joining, by = "cell_barcode"# Preview the results
head(louvain_stats_df)
# Summarize the stats and return in a data frame
louvain_summary_stats_df <- summarize_clustering_stats(louvain_stats_df)`summarise()` has grouped output by 'cluster_names_column', 'cluster_type'. You can override using the `.groups` argument.# Preview the summary results
head(louvain_summary_stats_df)purity plots
# Plot individual cluster purity stats
louvain_purity_plots <- plot_cluster_purity(louvain_stats_df)
louvain_purity_plots
silhouette width plots
# Plot individual cluster silhouette width stats
louvain_silhouette_plots <- plot_cluster_silhouette_width(louvain_stats_df)
louvain_silhouette_plots
Summary plots
summary_stats_df_list <- list("walktrap" = walktrap_summary_stats_df,
"louvain" = louvain_summary_stats_df)
# purity summary plot
plot_avg_validity_stats(summary_stats_df_list, "avg_purity")
#silhouette width summary plot
plot_avg_validity_stats(summary_stats_df_list, "avg_width")
Check cluster stability
k-means
# Check cluster stability
kmeans_bootstrapping_df <- plot_cluster_stability(sample_290_normalized, c(4:10), 1, "kmeans")
kmeans_bootstrapping_df$bootstrapping_results_kmeans_4
1 2 3 4
1 0.9670238 0.9809463 0.9486430 0.9660998
2 NA 0.9482672 0.9285272 0.9357409
3 NA NA 0.9350124 0.9835877
4 NA NA NA 1.0055630
$bootstrapping_results_kmeans_5
1 2 3 4 5
1 0.9995784 0.9926340 0.9986594 0.9980652 0.9984129
2 NA 0.9299901 0.8933558 0.9979998 0.9485987
3 NA NA 0.9308782 0.9977533 0.8601109
4 NA NA NA 0.9668614 0.9674479
5 NA NA NA NA 0.8866566
$bootstrapping_results_kmeans_6
1 2 3 4 5 6
1 1.001477 0.9985228 0.9985228 0.9985228 0.9985228 0.9914215
2 NA 0.9044500 0.8570454 0.9838284 0.8649372 0.8224922
3 NA NA 0.8759325 0.9900975 0.7858050 0.9895819
4 NA NA NA 0.8792771 0.8181676 0.9725378
5 NA NA NA NA 0.6785048 0.9405953
6 NA NA NA NA NA 0.8975756
$bootstrapping_results_kmeans_7
1 2 3 4 5 6 7
1 0.9001054 1.0998946 1.0998946 1.0998946 1.0998946 1.0976913 1.0998946
2 NA 0.4188519 0.4037244 1.0347909 -2.2723041 1.0388735 0.7674261
3 NA NA 0.7258064 1.0043798 1.0202658 1.0844502 0.8066779
4 NA NA NA 0.5423137 1.0363891 1.0763617 0.5390403
5 NA NA NA NA 0.6468716 0.7545548 0.9541823
6 NA NA NA NA NA 0.7590055 0.9883267
7 NA NA NA NA NA NA 0.3290688
$bootstrapping_results_kmeans_8
1 2 3 4 5 6 7 8
1 0.9901963 1.0075234 1.0075234 1.0075234 1.0075234 1.0051596 1.0075234 1.0075234
2 NA 0.7813833 0.7230846 0.8175508 0.4452037 0.9754934 0.7980177 1.0073305
3 NA NA 0.8575095 0.8887555 0.9617900 1.0009774 0.9882169 1.0074675
4 NA NA NA 0.8459702 0.9770733 0.9961512 0.7594789 0.8039574
5 NA NA NA NA 0.9299259 0.8926684 1.0045905 1.0038561
6 NA NA NA NA NA 0.8729004 0.9552194 0.9930871
7 NA NA NA NA NA NA 0.7744634 1.0041145
8 NA NA NA NA NA NA NA 0.9614452
$bootstrapping_results_kmeans_9
1 2 3 4 5 6 7 8 9
1 0.9332904 1.0650353 1.0650353 1.0650353 1.0650353 1.0382998 1.0650353 1.0650353 1.0650353
2 NA 0.1964553 0.1526277 0.1372241 -0.9438084 0.9912888 0.8278951 1.0578945 -0.8687848
3 NA NA 0.8274036 0.8497683 0.7745327 1.0375410 0.9777208 1.0650353 1.0062683
4 NA NA NA 0.7540287 1.0142023 1.0264148 0.7062673 0.6914737 1.0381503
5 NA NA NA NA 0.5562033 0.9950810 0.6247015 1.0650353 0.2076352
6 NA NA NA NA NA 0.7694919 0.9935326 1.0191571 0.7987781
7 NA NA NA NA NA NA 0.6731171 1.0650353 1.0636731
8 NA NA NA NA NA NA NA 0.9295724 1.0650353
9 NA NA NA NA NA NA NA NA 0.6077338
$bootstrapping_results_kmeans_10
1 2 3 4 5 6 7 8 9
1 0.9901451 0.9956219 0.9956219 0.9956219 0.9956219 0.9831498 0.9953332 0.9956219 0.9956219
2 NA 0.6166200 0.9829807 0.9956219 -0.2422819 0.9188056 0.7776176 0.9841653 0.2180217
3 NA NA 0.8035013 0.9927305 0.9888109 0.0190354 0.9956219 0.9610742 0.8255615
4 NA NA NA 0.9931459 0.9956219 0.9927305 0.9956219 0.4488661 0.9956219
5 NA NA NA NA 0.2643743 0.9806301 0.6084785 -0.5511335 0.3906408
6 NA NA NA NA NA 0.7550918 0.9591186 0.9927305 0.8492959
7 NA NA NA NA NA NA 0.8104246 0.8966279 0.9937464
8 NA NA NA NA NA NA NA 0.7326773 0.9924650
9 NA NA NA NA NA NA NA NA 0.6022141
10 NA NA NA NA NA NA NA NA NA
10
1 0.9956219
2 0.7472531
3 0.9690572
4 0.9956219
5 0.1587312
6 0.9850445
7 0.9846398
8 0.9744221
9 0.8250984
10 0.7981454graph-based, walktrap
walktrap_bootstrapping_df <- plot_cluster_stability(sample_290_normalized, c(5:25), 5, "walktrap")Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'walktrap_bootstrapping_df$bootstrapping_results_walktrap_5
1 2 3 4 5 6 7 8 9
1 0.2337592 0.3641509 0.69503233 0.4863197 0.7962920 0.7881401 0.7962920 -0.1400388 0.70287500
2 NA 0.2057748 -0.02691831 0.3544477 0.7791915 0.7285337 0.7664118 0.4100090 0.08976628
3 NA NA 0.47237401 0.6773503 0.7962920 0.7906039 0.7900004 0.7723067 0.61767860
4 NA NA NA 0.1722388 0.7962920 0.7778429 0.7807839 0.5895016 0.49057258
5 NA NA NA NA 0.4765148 0.7807839 0.7962920 0.7407085 0.79629202
6 NA NA NA NA NA 0.4226707 0.7962920 0.7165692 0.78031876
7 NA NA NA NA NA NA 0.5418302 0.7962920 -0.12936736
8 NA NA NA NA NA NA NA 0.2583178 0.73789757
9 NA NA NA NA NA NA NA NA 0.39532372
10 NA NA NA NA NA NA NA NA NA
11 NA NA NA NA NA NA NA NA NA
12 NA NA NA NA NA NA NA NA NA
13 NA NA NA NA NA NA NA NA NA
14 NA NA NA NA NA NA NA NA NA
15 NA NA NA NA NA NA NA NA NA
16 NA NA NA NA NA NA NA NA NA
17 NA NA NA NA NA NA NA NA NA
18 NA NA NA NA NA NA NA NA NA
19 NA NA NA NA NA NA NA NA NA
20 NA NA NA NA NA NA NA NA NA
21 NA NA NA NA NA NA NA NA NA
22 NA NA NA NA NA NA NA NA NA
23 NA NA NA NA NA NA NA NA NA
24 NA NA NA NA NA NA NA NA NA
25 NA NA NA NA NA NA NA NA NA
26 NA NA NA NA NA NA NA NA NA
27 NA NA NA NA NA NA NA NA NA
28 NA NA NA NA NA NA NA NA NA
29 NA NA NA NA NA NA NA NA NA
30 NA NA NA NA NA NA NA NA NA
31 NA NA NA NA NA NA NA NA NA
10 11 12 13 14 15 16 17 18
1 0.5523530 0.47172076 0.7358114 0.7158467451 0.796292 0.7962920 0.796292 0.7962920 0.4436454
2 0.3529728 0.05439643 0.7371911 0.5978696669 0.796292 0.7962920 0.796292 0.7962920 0.7807839
3 0.7465086 0.59765984 0.7667935 0.7842666957 0.796292 0.7962920 0.796292 0.7962920 0.7962920
4 0.3983402 0.55153467 0.7962920 0.7778429196 0.796292 0.7962920 0.796292 0.7962920 0.1516812
5 0.7549208 0.56599856 0.7836219 -0.0805628985 0.796292 0.7962920 0.796292 0.6972753 0.7962920
6 0.7678679 0.76786794 0.7962920 0.7678679383 0.796292 0.7962920 0.796292 0.3068858 0.7962920
7 0.7962920 0.79629202 0.7863170 0.7962920224 0.796292 0.7962920 0.796292 0.7962920 0.7962920
8 -0.1949394 -1.28922906 0.5617427 -0.0005161271 0.796292 0.7962920 0.796292 0.7807839 0.7430175
9 0.7080568 0.70232974 0.7807839 0.7747052597 0.796292 0.7962920 0.796292 0.7962920 0.7962920
10 0.4105566 -0.49938845 0.7175276 0.3770726472 0.796292 0.7962920 0.796292 0.7962920 0.6027030
11 NA 0.27937780 0.5264047 -0.8630218944 0.796292 0.7962920 0.796292 0.7962920 0.7804728
12 NA NA 0.4919512 0.5947988904 0.796292 0.7793062 0.796292 0.7863170 0.7962920
13 NA NA NA 0.5193245529 0.796292 0.7962920 0.796292 0.7962920 0.7807839
14 NA NA NA NA 0.720464 0.5007432 0.796292 0.7962920 0.7962920
15 NA NA NA NA NA 0.8418299 0.796292 0.7807839 0.7962920
16 NA NA NA NA NA NA 1.156543 0.7962920 0.7962920
17 NA NA NA NA NA NA NA 0.7689758 0.7962920
18 NA NA NA NA NA NA NA NA 0.5494790
19 NA NA NA NA NA NA NA NA NA
20 NA NA NA NA NA NA NA NA NA
21 NA NA NA NA NA NA NA NA NA
22 NA NA NA NA NA NA NA NA NA
23 NA NA NA NA NA NA NA NA NA
24 NA NA NA NA NA NA NA NA NA
25 NA NA NA NA NA NA NA NA NA
26 NA NA NA NA NA NA NA NA NA
27 NA NA NA NA NA NA NA NA NA
28 NA NA NA NA NA NA NA NA NA
29 NA NA NA NA NA NA NA NA NA
30 NA NA NA NA NA NA NA NA NA
31 NA NA NA NA NA NA NA NA NA
19 20 21 22 23 24 25 26 27
1 0.7870546 0.7807839 0.796292 0.4678422 0.7962920 0.7807839 0.7962920 0.7962920 0.796292
2 0.7524016 0.7671681 0.796292 0.7672932 0.7962920 0.7047506 0.7962920 0.7962920 0.796292
3 0.7524913 0.7962920 0.796292 0.7962920 0.7937182 0.6476336 0.7951034 0.7807839 0.796292
4 0.7799403 0.7962920 0.796292 0.4615404 0.7962920 0.7678679 0.7962920 0.7962920 0.796292
5 0.7962920 0.7962920 0.796292 0.7962920 0.7962920 0.7962920 0.7807839 0.7962920 0.796292
6 0.7939421 -0.2509264 0.796292 0.7703470 0.7962920 0.7962920 0.7203084 0.7962920 0.796292
7 0.6090922 0.7807839 0.796292 0.7962920 0.7962920 0.7962920 0.7962920 0.7962920 0.796292
8 0.7935039 0.7651738 0.796292 0.6242991 0.7962920 0.7962920 0.7941565 0.7807839 0.796292
9 0.7719443 0.7633336 0.796292 0.7786231 0.7962920 0.7665611 0.7962920 0.7950357 0.796292
10 0.7962920 0.7962920 0.796292 0.6372916 0.7962920 0.7808165 0.7962920 0.7962920 0.796292
11 0.7888724 0.7807839 0.796292 0.7669010 0.7962920 0.7692688 0.7962920 0.7678679 0.796292
12 0.4296328 0.7962920 0.796292 0.7962920 0.7727242 0.5656045 0.7807839 -0.7390529 0.796292
13 0.7962920 0.7962920 0.796292 0.7962920 0.7962920 0.7962920 0.7962920 0.7807839 0.796292
14 0.7287345 0.7962920 0.796292 0.7962920 0.2613518 0.7962920 0.7807839 0.7962920 0.796292
15 0.7199317 0.7962920 0.796292 0.7962920 0.5943317 0.7807839 0.6389421 0.5441175 0.796292
16 0.7962920 0.7962920 0.796292 0.7962920 0.7962920 0.7962920 0.7962920 0.7962920 -2.549730
17 0.7962920 0.7574311 0.796292 0.7807839 0.7962920 0.7962920 -3.0576375 0.7863170 0.796292
18 0.7962920 0.7962920 0.796292 0.1170607 0.7962920 0.7962920 0.7962920 0.7962920 0.796292
19 0.6429076 0.7962920 0.796292 0.7962920 0.7039821 0.4120714 0.7678679 0.5616306 0.796292
20 NA 0.9129716 0.796292 0.7962920 0.7962920 0.7962920 0.7807839 0.7962920 0.796292
21 NA NA 1.103378 0.7962920 0.7962920 0.7962920 0.7962920 0.7962920 0.796292
22 NA NA NA 0.4950029 0.7962920 0.7962920 0.7962920 0.7962920 0.796292
23 NA NA NA NA 1.0127896 0.7807839 0.7962920 0.7952061 0.796292
24 NA NA NA NA NA 0.8697287 0.7807839 0.6332141 0.796292
25 NA NA NA NA NA NA 1.1142243 0.7574311 0.796292
26 NA NA NA NA NA NA NA 0.5847220 0.796292
27 NA NA NA NA NA NA NA NA 1.093363
28 NA NA NA NA NA NA NA NA NA
29 NA NA NA NA NA NA NA NA NA
30 NA NA NA NA NA NA NA NA NA
31 NA NA NA NA NA NA NA NA NA
28 29 30 31
1 0.7962920 0.7962920 0.7962920 0.796292
2 0.7962920 0.7962920 0.7962920 0.796292
3 0.7962920 0.7962920 0.7962920 0.796292
4 0.7962920 0.7962920 0.7962920 0.796292
5 0.7962920 0.7962920 0.7962920 0.796292
6 0.7962920 0.7962920 0.7962920 0.796292
7 -0.2567903 0.7962920 0.7962920 0.796292
8 0.7962920 0.7962920 0.7962920 0.796292
9 0.7603720 0.7962920 0.7962920 0.796292
10 0.7962920 0.7962920 0.7962920 0.796292
11 0.7962920 0.7962920 0.7962920 0.796292
12 0.7962920 0.7962920 0.6405317 0.796292
13 0.7962920 0.7962920 0.7962920 0.796292
14 0.7962920 0.7962920 0.7962920 0.796292
15 0.7962920 0.7962920 0.6906954 0.796292
16 0.7962920 0.7962920 0.7962920 0.796292
17 0.7962920 0.7962920 0.7863170 0.796292
18 0.7962920 0.7962920 0.7962920 0.796292
19 0.7962920 0.7962920 0.6033720 0.796292
20 0.7962920 0.7962920 0.7962920 0.796292
21 0.7962920 -0.3747467 0.7807839 0.796292
22 0.7962920 0.7962920 0.7962920 0.796292
23 0.7962920 0.7962920 0.7962920 0.796292
24 0.7962920 0.7962920 0.6641389 0.796292
25 0.7962920 0.7962920 0.7807839 0.796292
26 0.7962920 0.7962920 0.5956118 0.796292
27 0.7962920 0.7962920 0.7962920 0.796292
28 1.1916350 0.7962920 0.7962920 0.796292
29 NA 1.1137857 0.7962920 0.796292
30 NA NA 1.0567321 0.796292
31 NA NA NA 1.203708
$bootstrapping_results_walktrap_10
1 2 3 4 5 6 7 8 9 10
1 0.7368454 1.126842 1.1266952 1.1268420 1.1251463 1.1268420 1.1267596 1.1001446 1.1268420 1.1268420
2 NA 0.586268 1.1268420 0.6168567 1.1090246 1.1268420 1.1131067 1.1067230 1.1268420 0.9333110
3 NA NA 0.5364273 1.1068697 1.0477022 1.0560960 0.9997905 1.0133417 1.0882808 1.1268420
4 NA NA NA 0.6203908 1.0320946 1.0543975 1.0134269 1.1268420 1.0867558 1.1071949
5 NA NA NA NA 0.3798614 1.0757234 -1.2563429 1.0155422 0.4994805 0.1295646
6 NA NA NA NA NA 0.4563509 1.0513898 1.1068351 1.0947087 1.1268420
7 NA NA NA NA NA NA 0.2574431 1.1236753 0.2316001 -0.8266955
8 NA NA NA NA NA NA NA 0.6366548 1.1268420 1.1268420
9 NA NA NA NA NA NA NA NA 0.3809386 1.1050585
10 NA NA NA NA NA NA NA NA NA 0.6754657
11 NA NA NA NA NA NA NA NA NA NA
12 NA NA NA NA NA NA NA NA NA NA
13 NA NA NA NA NA NA NA NA NA NA
14 NA NA NA NA NA NA NA NA NA NA
15 NA NA NA NA NA NA NA NA NA NA
16 NA NA NA NA NA NA NA NA NA NA
17 NA NA NA NA NA NA NA NA NA NA
18 NA NA NA NA NA NA NA NA NA NA
19 NA NA NA NA NA NA NA NA NA NA
20 NA NA NA NA NA NA NA NA NA NA
21 NA NA NA NA NA NA NA NA NA NA
22 NA NA NA NA NA NA NA NA NA NA
11 12 13 14 15 16 17 18 19
1 1.1268420 1.12684196 0.5979856 1.1268420 1.1268420 1.1268420 1.1020984 1.12684196 1.12684196
2 1.1268420 1.12684196 1.1063816 1.1268420 1.0975578 1.1268420 1.1067230 1.12684196 1.12684196
3 1.1067230 -0.30037543 1.1268420 0.9168992 1.1236318 1.1268420 1.1008033 1.12388503 1.12669522
4 1.1204582 0.97467131 1.1268420 0.7918143 1.1013198 1.1235632 1.1268420 1.10014462 1.10948541
5 1.0920475 0.05869578 1.1240256 0.8640745 0.8137207 1.0729556 0.6252446 0.06583510 0.28239966
6 -0.4252930 0.72762890 1.1268420 -0.6280101 1.1268420 1.1268420 1.1131067 1.12684196 1.12684196
7 1.1190305 -0.76970745 1.1268420 -0.4677229 0.8645709 1.1127801 1.0012403 -0.01855122 0.04554126
8 1.1268420 1.11310671 0.9550913 1.1131067 1.1268420 1.1268420 -0.6351765 1.12684196 1.12684196
9 1.1268420 0.58122910 1.1268420 0.4001945 -2.3566571 0.7382732 1.1250517 0.84407500 -1.61689683
10 1.1268420 1.06308088 1.1268420 1.1131067 1.1245528 1.1268420 1.0616623 1.02146736 1.02533597
11 0.6481865 1.10493757 1.1268420 1.0014677 1.1268420 1.1268420 1.1268420 1.12684196 1.12684196
12 NA 0.40039969 1.1268420 -2.7713537 1.0610354 1.1128789 1.0994356 0.88285796 1.05864136
13 NA NA 0.6681936 1.1268420 1.1268420 1.1268420 1.0449097 1.12684196 1.12684196
14 NA NA NA 0.4605665 1.0052595 1.1153703 1.1131067 1.04581568 1.04490975
15 NA NA NA NA 0.4654397 -1.3578072 1.1268420 0.95140180 -0.39118978
16 NA NA NA NA NA 0.6486259 1.1268420 0.71475592 1.01096175
17 NA NA NA NA NA NA 0.7039338 1.06763729 1.12471067
18 NA NA NA NA NA NA NA 0.45755030 1.06456389
19 NA NA NA NA NA NA NA NA 0.72025361
20 NA NA NA NA NA NA NA NA NA
21 NA NA NA NA NA NA NA NA NA
22 NA NA NA NA NA NA NA NA NA
20 21 22
1 1.1268420 1.1268420 1.126842
2 1.1268420 1.1268420 1.126842
3 1.1268420 1.1268420 1.126842
4 1.1131067 1.1268420 1.126842
5 1.1067230 1.1268420 1.126842
6 1.1268420 1.1268420 1.126842
7 1.1067230 1.1268420 1.126842
8 1.1268420 1.1268420 1.126842
9 1.1067230 1.1268420 1.126842
10 1.1268420 1.1268420 1.126842
11 1.1268420 1.1268420 1.126842
12 1.1131067 1.1268420 1.126842
13 1.1268420 1.1268420 1.126842
14 1.1268420 1.1268420 1.126842
15 1.1067230 1.1268420 1.126842
16 1.1067230 1.1268420 1.126842
17 1.1268420 1.1268420 1.126842
18 1.1067230 1.1268420 1.126842
19 1.1067230 1.1268420 1.126842
20 0.8522286 0.6143475 1.126842
21 NA 0.8040364 1.126842
22 NA NA 0.873158
$bootstrapping_results_walktrap_15
1 2 3 4 5 6 7 8 9 10
1 0.5682761 0.878977 0.5429863 0.8651600 0.8635363 0.8789770 0.7992195 0.8618871 0.8789770 0.8246326
2 NA 1.029267 0.8789770 0.8635363 0.8789770 0.8789770 0.8500808 0.8789770 0.8789770 0.8789770
3 NA NA 0.5716076 0.3421349 0.6618842 0.8789770 0.7825645 0.4592485 0.8635363 0.7477046
4 NA NA NA 0.4542557 0.8051221 0.8789770 0.7085440 0.1583161 0.8565861 0.8560689
5 NA NA NA NA 0.5035466 0.8789770 0.8643556 -0.5066611 0.8789770 0.8639326
6 NA NA NA NA NA 0.9951257 0.8720097 0.8789770 0.8789770 0.8789770
7 NA NA NA NA NA NA 0.8133522 0.8430914 0.8789770 0.8694777
8 NA NA NA NA NA NA NA 0.5405562 0.8740688 0.8386150
9 NA NA NA NA NA NA NA NA 0.9509551 -0.3664340
10 NA NA NA NA NA NA NA NA NA 0.9724211
11 NA NA NA NA NA NA NA NA NA NA
12 NA NA NA NA NA NA NA NA NA NA
13 NA NA NA NA NA NA NA NA NA NA
11 12 13
1 0.8789770 0.8377270 0.878977
2 0.8789770 0.8789770 0.878977
3 0.8788002 0.5167107 0.878977
4 0.8785247 0.8196131 0.878977
5 0.8789770 0.8633355 0.878977
6 0.6735246 0.8789770 0.878977
7 0.6744351 0.8342063 0.878977
8 0.8789770 0.8453748 0.878977
9 0.8789770 0.8635363 0.878977
10 0.8789770 0.8654282 0.878977
11 1.0445582 0.8778154 0.878977
12 NA 0.9515792 0.878977
13 NA NA 1.121023
$bootstrapping_results_walktrap_20
1 2 3 4 5 6 7 8 9
1 0.5454626 0.9349825 0.9349825 0.9222283 0.3012490 0.5832378 0.9349825 0.9349825 0.9349825
2 NA 0.9708135 0.9349825 0.9313087 0.9275175 0.9349825 0.9349825 0.9349825 0.9349825
3 NA NA 0.5923971 0.9229469 0.9221966 0.8785964 0.9349825 0.9349825 0.9349825
4 NA NA NA 0.6643224 0.5127162 0.8362766 0.9349825 0.9349825 0.6910755
5 NA NA NA NA 0.4755791 0.1343549 0.9349825 0.9349825 0.9349825
6 NA NA NA NA NA 0.4728529 0.9124333 0.9349825 0.9343165
7 NA NA NA NA NA NA 0.8841570 0.9349825 0.9349825
8 NA NA NA NA NA NA NA 0.9524640 0.6566124
9 NA NA NA NA NA NA NA NA 0.8422199
10 NA NA NA NA NA NA NA NA NA
11 NA NA NA NA NA NA NA NA NA
12 NA NA NA NA NA NA NA NA NA
13 NA NA NA NA NA NA NA NA NA
10 11 12 13
1 0.92219662 0.9307583564 0.9349825 0.9349825
2 0.93498254 0.9275174704 0.9349825 0.9057129
3 0.93498254 0.8482516468 0.9349825 0.9349825
4 0.73513585 0.6913207595 0.7887509 0.9349825
5 0.88615974 0.0007058748 0.9221966 0.9349825
6 0.02713836 0.8492805845 0.4970422 0.9349825
7 -0.74405019 0.9349825421 0.9349825 0.9349825
8 0.93498254 0.9349825421 0.9349825 0.9349825
9 0.91282403 0.9349825421 0.9349825 0.9349825
10 0.54399103 0.9234032415 0.8723314 0.9349825
11 NA 0.8000215869 0.9349825 0.9349825
12 NA NA 0.9464180 0.9349825
13 NA NA NA 1.0650175
$bootstrapping_results_walktrap_25
1 2 3 4 5 6 7 8
1 0.6401756 0.902586 0.8045481 0.8829504 0.8270410 0.7348924 0.8761060 0.758956
2 NA 0.797300 0.9025860 0.9025860 0.9025860 0.8454894 0.9025860 0.902586
3 NA NA 0.5999639 0.8965087 0.5405041 0.8762362 0.8474989 0.902586
4 NA NA NA 0.6060054 0.6213154 0.4952407 0.9017369 0.902586
5 NA NA NA NA 0.7222909 0.4400087 0.8125231 0.902586
6 NA NA NA NA NA 0.5778824 0.8759082 0.902586
7 NA NA NA NA NA NA 0.9322287 0.902586
8 NA NA NA NA NA NA NA 1.044393graph-based, louvain
louvain_bootstrapping_df <- plot_cluster_stability(sample_290_normalized, c(5:25), 5, "louvain")Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'
Warning in (function (to_check, X, clust_centers, clust_info, dtype, nn, :
detected tied distances to neighbors, see ?'BiocNeighbors-ties'louvain_bootstrapping_df$bootstrapping_results_louvain_5
1 2 3 4 5 6 7 8 9
1 0.1162653 0.5286774 0.49299852 0.39231136 0.65056808 0.7809545 0.43863738 0.5657062 0.7299181
2 NA 0.3267664 0.05846251 0.11821780 0.44696071 0.7809545 0.32600558 0.6658760 0.6941972
3 NA NA 0.34192172 -0.08109674 0.62983914 0.7809545 -0.06834833 0.1321774 0.7729311
4 NA NA NA 0.46498547 0.04189229 0.7809545 -0.31113572 -0.4593382 0.7381432
5 NA NA NA NA 0.18539616 0.7809545 -0.02501738 0.6573275 0.3634234
6 NA NA NA NA NA 1.2190455 0.78095451 0.7809545 0.7809545
7 NA NA NA NA NA NA 0.29912611 -0.7252094 0.5290518
8 NA NA NA NA NA NA NA 0.4470762 0.7694778
9 NA NA NA NA NA NA NA NA 0.2208099
10 NA NA NA NA NA NA NA NA NA
11 NA NA NA NA NA NA NA NA NA
12 NA NA NA NA NA NA NA NA NA
13 NA NA NA NA NA NA NA NA NA
14 NA NA NA NA NA NA NA NA NA
10 11 12 13 14
1 0.7714659 0.7809545 0.7809545 0.7809545 0.7502048
2 0.7060206 0.7809545 0.7809545 0.7809545 0.7479405
3 0.7631415 0.7809545 0.7809545 0.7809545 0.6991967
4 0.6519251 0.7809205 0.7809545 0.7809545 0.5396857
5 0.6594438 0.7809545 0.7809545 0.7809545 0.6595305
6 0.7809545 0.7809545 0.7809545 0.7553386 0.7809545
7 0.7110823 0.7809545 0.7809545 0.7809545 0.6439248
8 0.6748801 0.7743755 0.7809545 0.7809545 0.6324611
9 0.6652328 0.7809545 0.7809545 0.7809545 0.7194283
10 0.1444341 0.7711004 0.7809545 0.7809545 0.7683622
11 NA 0.3161987 0.7809545 0.7809545 0.7232782
12 NA NA 1.1056620 0.7809545 0.7809545
13 NA NA NA 0.6398171 0.7809545
14 NA NA NA NA 0.1862816
$bootstrapping_results_louvain_10
1 2 3 4 5 6 7 8 9
1 0.2473704 0.04570967 0.476384 0.6288087 0.8180017 0.610267010 1.0037662 0.86367833 0.9671207
2 NA 0.53319242 -1.599963 0.1258976 0.5872328 0.391256870 1.0037662 0.93837340 0.9196696
3 NA NA 0.575916 0.1936520 0.8921062 -0.007416019 1.0051000 0.44577929 0.9487689
4 NA NA NA 0.3269078 -0.9793703 -0.378862234 1.0048897 -0.24018662 0.9151863
5 NA NA NA NA 0.3033987 0.453110304 1.0294488 0.93477435 0.9028515
6 NA NA NA NA NA 0.563119320 1.0367463 0.04718961 0.9677154
7 NA NA NA NA NA NA 0.7362361 1.01030714 1.0367463
8 NA NA NA NA NA NA NA 0.55667544 0.7891054
9 NA NA NA NA NA NA NA NA 0.2855326
10 NA NA NA NA NA NA NA NA NA
11 NA NA NA NA NA NA NA NA NA
12 NA NA NA NA NA NA NA NA NA
13 NA NA NA NA NA NA NA NA NA
10 11 12 13
1 0.9944210 1.0367463 0.9754163 1.0367463
2 0.9781032 1.0367463 1.0054463 1.0367463
3 1.0351450 1.0367463 0.9451158 1.0367463
4 0.7380862 1.0367463 0.7920203 1.0367463
5 0.5210447 1.0367463 0.9044781 1.0367463
6 1.0312233 1.0367463 0.7822222 1.0367463
7 1.0367463 1.0367463 1.0367463 1.0367463
8 1.0367463 1.0367463 0.8451361 1.0367463
9 0.8452047 1.0294488 0.9924787 1.0367463
10 0.3325847 1.0366978 0.9464834 1.0367463
11 NA 0.4695916 0.9096314 1.0367463
12 NA NA 0.4017059 1.0367463
13 NA NA NA 0.9195688
$bootstrapping_results_louvain_15
1 2 3 4 5 6 7 8 9
1 0.4215075 0.1725344 0.5990470 0.7581539 1.0175210 0.67674632 0.95484433 0.9760049 0.9850794
2 NA 0.4756992 0.3028639 0.7010759 1.0175210 -0.04953896 0.86754111 0.9635618 0.9955859
3 NA NA 0.3037625 -0.9565882 1.0175210 -1.03164144 -0.36201473 0.8943603 0.7432303
4 NA NA NA 0.2658983 1.0175210 0.14390782 0.95102725 0.8933575 0.5268055
5 NA NA NA NA 0.3786006 1.01487571 1.00291886 1.0175210 1.0175210
6 NA NA NA NA NA 0.54150116 0.03951335 0.9404799 1.0110055
7 NA NA NA NA NA NA 0.72958120 0.8817742 1.0170150
8 NA NA NA NA NA NA NA 0.3084321 0.8985629
9 NA NA NA NA NA NA NA NA 0.3043807
10 NA NA NA NA NA NA NA NA NA
11 NA NA NA NA NA NA NA NA NA
10 11
1 1.017521 0.9755865
2 1.017521 0.9945886
3 1.017521 0.8317078
4 1.017521 0.8451054
5 1.017521 1.0175210
6 1.017521 0.7128626
7 1.017521 0.9539786
8 1.017521 1.0002172
9 1.017521 0.9339079
10 0.512719 0.9716798
11 NA 0.6121876
$bootstrapping_results_louvain_20
1 2 3 4 5 6 7 8 9
1 0.4827849 -0.1341857 0.8641263 0.9260466 0.81251212 1.1529476 1.07789206 1.1340792 1.1059554
2 NA 0.3591579 0.3585899 0.6779199 0.04412644 1.1408084 0.83273584 1.1244941 1.1007839
3 NA NA 0.3576969 -1.4642851 -1.23028917 1.1453437 0.05997225 0.9998965 0.9172268
4 NA NA NA 0.5149432 0.72879846 1.1529476 1.08155580 1.0319902 0.5969345
5 NA NA NA NA 0.49598082 1.1313333 -1.09170760 1.0685807 1.1270578
6 NA NA NA NA NA 0.3639062 1.15294764 1.1529476 1.1529476
7 NA NA NA NA NA NA 0.60886877 1.1027079 1.1498838
8 NA NA NA NA NA NA NA 0.4297201 1.0943584
9 NA NA NA NA NA NA NA NA 0.3843897
10 NA NA NA NA NA NA NA NA NA
11 NA NA NA NA NA NA NA NA NA
10 11
1 1.1529476 1.0862343
2 1.1529476 1.0523757
3 1.1529476 0.8274166
4 1.1507256 0.9700722
5 1.1527803 0.4612309
6 1.1529476 1.1459303
7 1.1527786 0.8232249
8 1.1529476 1.1332563
9 1.1495683 1.0380187
10 0.5273953 0.9533133
11 NA 0.4364729
$bootstrapping_results_louvain_25
1 2 3 4 5 6 7 8 9
1 0.4934605 -0.7477598 0.7770286 0.9454290 1.17032134 1.2073541 0.79515562 1.2002801 1.1549619
2 NA 0.3342984 0.1778415 0.7068807 0.74517214 1.2033710 -0.05520674 1.1751720 1.1368279
3 NA NA 0.3084289 -1.2580107 0.08279849 1.1900633 -1.16726563 0.8926730 1.0493183
4 NA NA NA 0.4900880 1.12826897 1.2073541 0.65064121 0.5331506 1.1369276
5 NA NA NA NA 0.61969206 1.1900633 -1.86691572 1.2069953 1.0960606
6 NA NA NA NA NA 0.4784022 1.19006328 1.2073541 1.2073541
7 NA NA NA NA NA NA 0.45300042 1.1881135 1.1090548
8 NA NA NA NA NA NA NA 0.4010123 1.1516553
9 NA NA NA NA NA NA NA NA 0.5377174
10 NA NA NA NA NA NA NA NA NA
11 NA NA NA NA NA NA NA NA NA
10 11
1 1.2073541 1.1705120
2 1.2073541 1.1200488
3 1.2073541 0.9403677
4 1.2059491 1.0728441
5 1.2052284 0.6890795
6 1.2073541 1.2073541
7 1.2073541 0.7388616
8 1.2073541 1.1124933
9 1.2073541 1.1917026
10 0.4711264 1.0125282
11 NA 0.4856809Session info
sessionInfo()R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8
[6] LC_MESSAGES=C.UTF-8 LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] pheatmap_1.0.12 ggpubr_0.4.0 bluster_1.4.0 readr_2.1.1
[5] scater_1.22.0 ggplot2_3.3.5 scuttle_1.4.0 SingleCellExperiment_1.16.0
[9] SummarizedExperiment_1.24.0 Biobase_2.54.0 GenomicRanges_1.46.1 GenomeInfoDb_1.30.0
[13] IRanges_2.28.0 S4Vectors_0.32.3 BiocGenerics_0.40.0 MatrixGenerics_1.6.0
[17] matrixStats_0.61.0 magrittr_2.0.1
loaded via a namespace (and not attached):
[1] bitops_1.0-7 RColorBrewer_1.1-2 rprojroot_2.0.2 tools_4.1.2
[5] backports_1.4.0 utf8_1.2.2 R6_2.5.1 irlba_2.3.3
[9] vipor_0.4.5 DBI_1.1.1 colorspace_2.0-2 nnet_7.3-16
[13] withr_2.4.3 tidyselect_1.1.1 gridExtra_2.3 compiler_4.1.2
[17] cli_3.1.0 BiocNeighbors_1.12.0 DelayedArray_0.20.0 labeling_0.4.2
[21] scales_1.1.1 stringr_1.4.0 digest_0.6.29 rmarkdown_2.11
[25] XVector_0.34.0 pkgconfig_2.0.3 htmltools_0.5.2 sparseMatrixStats_1.6.0
[29] fastmap_1.1.0 rlang_0.4.12 rstudioapi_0.13 DelayedMatrixStats_1.16.0
[33] farver_2.1.0 generics_0.1.1 BiocParallel_1.28.2 dplyr_1.0.7
[37] car_3.0-12 RCurl_1.98-1.5 BiocSingular_1.10.0 modeltools_0.2-23
[41] GenomeInfoDbData_1.2.7 Matrix_1.3-4 Rcpp_1.0.7 ggbeeswarm_0.6.0
[45] munsell_0.5.0 fansi_0.5.0 abind_1.4-5 viridis_0.6.2
[49] lifecycle_1.0.1 stringi_1.7.6 yaml_2.2.1 carData_3.0-4
[53] zlibbioc_1.40.0 flexmix_2.3-17 grid_4.1.2 parallel_4.1.2
[57] ggrepel_0.9.1 crayon_1.4.2 lattice_0.20-45 cowplot_1.1.1
[61] beachmat_2.10.0 splines_4.1.2 hms_1.1.1 knitr_1.36
[65] pillar_1.6.4 optparse_1.7.1 igraph_1.2.9 ggsignif_0.6.3
[69] ScaledMatrix_1.2.0 glue_1.5.1 evaluate_0.14 renv_0.14.0
[73] vctrs_0.3.8 tzdb_0.2.0 getopt_1.20.3 gtable_0.3.0
[77] purrr_0.3.4 tidyr_1.1.4 assertthat_0.2.1 xfun_0.28
[81] rsvd_1.0.5 broom_0.7.10 miQC_1.2.0 rstatix_0.7.0
[85] viridisLite_0.4.0 tibble_3.1.6 beeswarm_0.4.0 cluster_2.1.2
[89] ellipsis_0.3.2 here_1.0.1 ---
title: "Clustering"
author: "Data Lab for ALSF"
date: "2022"
output:
  html_document:
    toc: yes
    df_print: paged
  html_notebook:
    toc: yes
    toc_float: yes
---

This notebook will begin looking at clustering methods on the expression of the genes in a single sample of the dataset of interest, from an unbiased approach.

## Set Up 

```{r}
# Load libraries
library(magrittr)
library(scater)
library(readr)
library(bluster)
library(ggpubr)
library(pheatmap)

# Set file paths
data_dir <- file.path("results", "Gawad_processed_data")

# Source custom functions script
source(file.path("utils", "clustering-functions.R"))
```

## Read in data

```{r}
sample_290_normalized <- read_rds(
  file.path(data_dir, "SCPCS000216", "SCPCL000290_miQC_downstream_processed_normalized_reduced_sce.rds"))
```

## Perform clustering

### k-means

```{r fig.height = 10.5}
# Perform k-means clustering
sample_290_normalized <- kmeans_clustering(
  sample_290_normalized,
  params_range = c(4:10),
  step_size = 1,
  check_stability = TRUE
)

# grab column names with clustering results
kmeans_cols <- grep("kmeans", colnames(colData(sample_290_normalized)))
kmeans_cluster_names <- colnames(colData(sample_290_normalized)[, kmeans_cols])

# Plot k-means
kmeans_plot_list <- kmeans_cluster_names %>%
  purrr::map(~ plotReducedDim(sample_290_normalized, dimred = "UMAP", colour_by = .x) + 
               theme_bw()+
               theme(text = element_text(size = 22)))

cowplot::plot_grid(plotlist = kmeans_plot_list, ncol = 4)
```

### graph-based, walktrap

```{r fig.height = 9.5}
# Perform graph-based walktrap clustering
sample_290_normalized <- graph_clustering(
  sample_290_normalized,
  params_range = c(5:25),
  step_size = 5,
  weighting_type = "rank",
  cluster_function = "walktrap",
  check_stability = TRUE
)

# grab column names with clustering results
walktrap_cols <- grep("walktrap", colnames(colData(sample_290_normalized)))
walktrap_cluster_names <- colnames(colData(sample_290_normalized)[, walktrap_cols])

# Plot
walktrap_plot_list <- walktrap_cluster_names %>%
   purrr::map(~ plotReducedDim(sample_290_normalized, dimred = "UMAP", colour_by = .x) + 
                theme_bw() +
                theme(text = element_text(size = 22)))

cowplot::plot_grid(plotlist = walktrap_plot_list, ncol = 3)
```

### graph-based, louvain

```{r fig.height = 8.5}
# Perform graph-based louvain clustering
sample_290_normalized <- graph_clustering(
  sample_290_normalized,
  params_range = c(5:25),
  step_size = 5,
  weighting_type = "jaccard",
  cluster_function = "louvain",
  check_stability = TRUE
)

# grab column names with clustering results
louvain_cols <- grep("walktrap", colnames(colData(sample_290_normalized)))
louvain_cluster_names <- colnames(colData(sample_290_normalized)[, louvain_cols])

# Plot
louvain_plot_list <- louvain_cluster_names %>%
   purrr::map(~ plotReducedDim(sample_290_normalized, dimred = "UMAP", colour_by = .x) + 
                theme_bw() +
                theme(text = element_text(size = 22)))


cowplot::plot_grid(plotlist = louvain_plot_list, ncol = 3)
```

## Check cluster validity stats

### k-means

```{r fig.height = 20.5}
# Check the k-means cluster validity stats for each of the clusters and return
# stats in a data frame
kmeans_stats_df <- create_metadata_stats_df(sample_290_normalized, c(4:10), 1, "kmeans")

# Preview the results
head(kmeans_stats_df)

# Summarize the stats and return in a data frame
kmeans_summary_stats_df <- summarize_clustering_stats(kmeans_stats_df)

# Preview the summary results
head(kmeans_summary_stats_df)
```

#### purity plots

```{r fig.height=10, fig.width=15}
# Plot individual cluster purity stats
kmeans_purity_plots <- plot_cluster_purity(kmeans_stats_df)

kmeans_purity_plots
```

#### silhouette width plots

```{r fig.height=10, fig.width=15}
# Plot individual cluster silhouette width stats
kmeans_silhouette_plots <- plot_cluster_silhouette_width(kmeans_stats_df)

kmeans_silhouette_plots
```

### graph-based, walktrap

```{r fig.height = 15.5}
# Check the walktrap cluster validity stats for each of the clusters and return
# stats in a data frame
walktrap_stats_df <- create_metadata_stats_df(sample_290_normalized, c(5:25), 5, "walktrap")
  
# Preview the all stats results
head(walktrap_stats_df)

# Summarize the stats and return in a data frame
walktrap_summary_stats_df <- summarize_clustering_stats(walktrap_stats_df)

# Preview the summary results
head(walktrap_summary_stats_df)
```

#### purity plots

```{r fig.height=10, fig.width=15}
# Plot individual cluster purity stats
walktrap_purity_plots <- plot_cluster_purity(walktrap_stats_df)

walktrap_purity_plots
```

#### silhouette width plots

```{r fig.height=10, fig.width=15}
# Plot individual cluster silhouette width stats
walktrap_silhouette_plots <- plot_cluster_silhouette_width(walktrap_stats_df)

walktrap_silhouette_plots
```

### graph-based, louvain

```{r fig.height = 9.5}
# Check the louvain cluster validity stats for each of the clusters and return
# stats in a data frame
louvain_stats_df <- create_metadata_stats_df(sample_290_normalized, c(5:25), 5, "louvain")

# Preview the results
head(louvain_stats_df)

# Summarize the stats and return in a data frame
louvain_summary_stats_df <- summarize_clustering_stats(louvain_stats_df)

# Preview the summary results
head(louvain_summary_stats_df)
```

#### purity plots

```{r fig.height=10}
# Plot individual cluster purity stats
louvain_purity_plots <- plot_cluster_purity(louvain_stats_df)

louvain_purity_plots
```

#### silhouette width plots

```{r fig.height=10}
# Plot individual cluster silhouette width stats
louvain_silhouette_plots <- plot_cluster_silhouette_width(louvain_stats_df)

louvain_silhouette_plots
```

### Summary plots

```{r}
summary_stats_df_list <- list("walktrap" = walktrap_summary_stats_df,
                              "louvain" = louvain_summary_stats_df)

# purity summary plot
plot_avg_validity_stats(summary_stats_df_list, "avg_purity")

#silhouette width summary plot
plot_avg_validity_stats(summary_stats_df_list, "avg_width")
```

## Check cluster stability

### k-means

```{r}
# Check cluster stability
kmeans_bootstrapping_df <- plot_cluster_stability(sample_290_normalized, c(4:10), 1, "kmeans")
kmeans_bootstrapping_df
```

### graph-based, walktrap

```{r}
walktrap_bootstrapping_df <- plot_cluster_stability(sample_290_normalized, c(5:25), 5, "walktrap")
walktrap_bootstrapping_df
```

### graph-based, louvain

```{r}
louvain_bootstrapping_df <- plot_cluster_stability(sample_290_normalized, c(5:25), 5, "louvain")
louvain_bootstrapping_df
```

## Session info

```{r}
sessionInfo()
```
